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Table 2 Differentially expressed genes between FA and control cells after cisplatin treatment.

From: Analysis of baseline and cisplatin-inducible gene expression in Fanconi anemia cells using oligonucleotide-based microarrays

Membrane protein

  

Gene Description

GenBank accession no.

Change*

C-type lectin, AICL

X96719

Up 1 h in WT

Integral membrane protein, LIG-1

W25875

Up 1 h in FA

Integral membrane protein, SIGMAR1

U79528

NC

Growth factor

  

Insulin growth factor binding protein 2, IGFBP-2

S37730

NC

Endothelial cell growth factor, platelet-derived, ECGF1

M63193

Down 24 h in WT

IL18R1/IL-1RRP

U43672

NC

BMP-4

U43842

Down 1 h in FA

IL10R

U00672

NC

Notch ligand, JAGL1

AF003837

NC

Signal transduction

  

Adapter molecule in signal transduction, DOC1

U53445

Up 24 h in FA

SRC family tyrosine kinase, FYN

M14333

Down 24 h in FA

Protein tyrosine phosphatase, PTPG

U46116

Down >7 h in FA

Regulator of G-protein signaling, G0S8/RGS

L13463

Up 1 h in FA

Regulator of G-protein signaling, GIPC/RGS19IP1

AF089816

Up 24 h in WT

Mitogen-activated protein kinase kinase kinase kinase 4, MAP4K4

AB014587

NC

Serine/threonine kinase, KIAA0623

AB014523

NC

Related to the N-terminus of TRE, RNTRE

D13644

NC

Related to intracellular calcium signaling, HOMER-1B

Y17829

NC

MEK6/MKK6

U39657

NC

Zinc finger protein, LOC58500

X16282

NC

LYT10/NF-kB2

U20816

NC

Dual specific tyrosine kinase, DYRK2

Y13493

NC

Phospholipase C beta 2, PLCB2

M95678

NC

Containing Pleckstrin homology domain, KIAA0763

AB18306

NC

Vesicular Rab-GAP/TBC-containing protein, AD3

AB024057

NC

Calcium-binding protein, S100C/Calgizzarin

D38583

NC

Transcription factor

  

Transcript homolog, MEST/PEG1

D78611

NC

Myotubularin related protein 2, MTMR2

AB028996

NC

Homeobox protein related to skeletal development, MSX1

M97676

NC

Transcription factor, MRG1

U65093

NC

Homeobox, PRH/PRHX

L16499

NC

MSX2/MSH/HOX8

D89377

NC

Transcriptin activating factor, CREBP

L05515

NC

Transcription coactivator, TCFEC/TFECL

D43945

NC

Putative transcription regulator, CARM-1

AI660225

Down 7 h in FA

Cell cycle

  

CDC25A

M81933

NC

Apoptosis

  

Similar to rat CIPHAR-1, DKFZp564O0823

AL080121

NC

BCLX

Z23115

NC

Protease inhibitor, PLANH2/PAI2

Y00630

NC

Vanin-2, VNN2

D89974

Down 24 h in WT

DNA repair/Chromosome regulator

  

Similar to DNA helicase, FLJ10738

W28620

NC

HPARG

AF005043

NC

BAF170

U66616

NC

PMS2

U13696

NC

Intracellular processing

  

Ubiquitin protein ligase, E6-AP

AF002224

Up >1 h in WT

Putative splicing factor, DOM3Z

AF059252

Down >7 h in FA

CBP2/TAFI

M75106

NC

Uronyl 2-sufotransferase

AB020316

NC

Miscellaneous

  

Procollagen-proline, 2-oxoglutarate 4-dioxygenase, P4HA2

U90441

NC

Unknown, FLJ21174

AA149307

NC

Unknown, expressed in macrophage

X89059

Up >1 h FA

Clathrin light chain b

X81637

NC

Related to lipodystrophy, LPIN2

D87436

NC

ME1

U43944

NC

Unknown, KIAA0090

D42044

Down 24 h in WT

Unknown, DKFZp564I122

AL080062

NC

Unknown, KIAA0241

D87682

NC

  1. * NC indicates that the observed changes were not consistent. When consistent changes were observed indicated are up or down regulation, followed by time point(s) after treatment at which changes of expression were observed, and cell type; WT indicates observed in corrected cells, FA indicates observed in FA cells.